Package: fastnntr 0.3.0
fastnntr: Fast Rust-Based SplitsTree NeighbourNet Algorithm
A fast Rust implementation of the NeighbourNet algorithm (Bryant & Moulton, 2004) for phylogenetic analysis. It constructs an implicit split network from a distance matrix and returns it in a 'networx'-compatible structure for exploratory visualisation with 'tanggle', 'ggplot2', or 'phangorn'.
Authors:
fastnntr_0.3.0.tar.gz
fastnntr_0.3.0.zip(r-4.7)fastnntr_0.3.0.zip(r-4.6)fastnntr_0.3.0.zip(r-4.5)
fastnntr_0.3.0.tgz(r-4.6-x86_64)fastnntr_0.3.0.tgz(r-4.6-arm64)fastnntr_0.3.0.tgz(r-4.5-x86_64)fastnntr_0.3.0.tgz(r-4.5-arm64)
fastnntr_0.3.0.tar.gz(r-4.7-arm64)fastnntr_0.3.0.tar.gz(r-4.7-x86_64)fastnntr_0.3.0.tar.gz(r-4.6-arm64)fastnntr_0.3.0.tar.gz(r-4.6-x86_64)
fastnntr_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
fastnntr/json (API)
| # Install 'fastnntr' in R: |
| install.packages('fastnntr', repos = c('https://rhysnewell.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rhysnewell/fast-nnt/issues
Last updated from:7e7c3f3060. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 192 | ||
| linux-devel-x86_64 | OK | 191 | ||
| source / vignettes | OK | 351 | ||
| linux-release-arm64 | OK | 199 | ||
| linux-release-x86_64 | OK | 189 | ||
| macos-release-arm64 | OK | 125 | ||
| macos-release-x86_64 | OK | 283 | ||
| macos-oldrel-arm64 | OK | 156 | ||
| macos-oldrel-x86_64 | OK | 305 | ||
| windows-devel | OK | 216 | ||
| windows-release | OK | 245 | ||
| windows-oldrel | OK | 303 | ||
| wasm-release | OK | 173 |
Exports:run_neighbornet_networkxrun_neighbournet_networkxset_fastnnt_threads
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute a NeighbourNet split network | run_neighbornet_networkx run_neighbournet_networkx |
| Set the global thread count for fastnnt | set_fastnnt_threads |
