Introduction to fastnntr: Computing and Visualising Neighbour-Net Networks
Overview | Why neighbour networks? | Installation | Example 1: Genetic data (SNP genotypes) | Input data | Distance matrix | Compute the Neighbour-Net | Quick base-R plot | ggplot2 plot with tanggle | Export | Example 2: Genomic distances (Average Nucleotide Identity) | Filter to samples with known phylogroup | Optional: rotate the layout | ggplot2 plot | Example 3: Morphological data (discrete characters) | Filter low-coverage taxa and characters | Distance matrix and network | Summary of the core workflow | Session info | References
Rendered fromfastnntr-vignette.Rmdusingknitr::rmarkdown